analyze.align.clustered.pdbs.10.pl ../analyze.align.clustered.pdbs.10.csv ../analyze.align.clustered.pdbs.10.2.csv ../analyze.align.clustered.pdbs.10.3.csv successful.aacp10.txt failure.aacp10.txt
Have 1917 chains in clusters
Checking align.clustered.pdbs.output1.bz2
No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 263, chunk 45.
No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 263, chunk 46.
Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 255, chunk 71.
Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 255, chunk 72.
Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 255, chunk 205.
Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 255, chunk 206.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 213.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 229.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 230.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 231.
Finished reading align.clustered.pdbs.output1.bz2
Checking align.clustered.pdbs.output2
No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 263, chunk 45.
No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 263, chunk 46.
Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 255, chunk 71.
Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 255, chunk 72.
Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 255, chunk 205.
Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 255, chunk 206.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 213.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 229.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 230.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 231.
Finished reading align.clustered.pdbs.output2
Checking align.clustered.pdbs.output3
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 208.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 224.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 225.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 226.
Finished reading align.clustered.pdbs.output3
Checking align.clustered.pdbs.output4
Problem with 1CBJA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 42.
Problem with 1IIHA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 115.
Problem with 1N55A 5TIMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 137.
Problem with 1OA4A 2NLRA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 146.
Problem with 1Q0EA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 151.
Problem with 1TCDA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 179.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 196.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 204.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 205.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 206.
Finished reading align.clustered.pdbs.output4
Checking align.clustered.pdbs.output5
Problem with 1CBJA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 36.
Problem with 1IIHA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 109.
Problem with 1N55A 5TIMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 131.
Problem with 1OA4A 2NLRA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 140.
Problem with 1Q0EA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 146.
Problem with 1TCDA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 174.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 191.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 199.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 200.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 201.
Finished reading align.clustered.pdbs.output5
Checking align.clustered.pdbs.output6
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 191.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 199.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 200.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 201.
Finished reading align.clustered.pdbs.output6
Checking align.clustered.pdbs.output7
Finished reading align.clustered.pdbs.output7
Checking align.clustered.pdbs.output8
Problem with 1J8FC 1J8FA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 120.
Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 307, chunk 122.
Problem with 1NH2B 1NH2C; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 147.
Problem with 1NVPB 1NVPC; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 155.
Finished reading align.clustered.pdbs.output8
Checking align.clustered.pdbs.2.output1
Finished reading align.clustered.pdbs.2.output1
Checking align.clustered.pdbs.2.output2
Finished reading align.clustered.pdbs.2.output2
Checking align.clustered.pdbs.2.output3
Finished reading align.clustered.pdbs.2.output3
Checking align.clustered.pdbs.2.output4
Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 249.
Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 250.
Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 255.
Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 258.
Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 265.
Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 272.
Problem with 1P1VB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 274.
Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 294.
Finished reading align.clustered.pdbs.2.output4
Checking align.clustered.pdbs.2.output5
Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 249.
Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 250.
Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 255.
Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 258.
Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 265.
Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 272.
Problem with 1P1VB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 274.
Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 289.
Finished reading align.clustered.pdbs.2.output5
Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1
Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1
Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2
Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2
Checking align.clustered.pdbs.2.output6
Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 249.
Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 250.
Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 255.
Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 258.
Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 265.
Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 272.
Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 289.
Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 307, chunk 758.
Problem with 1L8BB 1IPBA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 804.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 838.
Problem with 2GSRA 4GSSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 850.
Problem with 2GSRA 6GSSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 851.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 271, chunk 872.
Problem with 1RF8A 1AP80: RMSD 6.05267; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.10.pl line 307, chunk 876.
Finished reading align.clustered.pdbs.2.output6
Have 1119 chain pairs to check, 565 no-difference, 10 skip-output1, 554 successful1, 450 successful2, 554 failure1, 554 failure2, 39 clusters
EBLOSUM62_P pequiv_diff:
max: 0.8097169999999999999999999999997
mean: 0.05424382040876896800395356168264
EGONNET_P pequiv_diff:
max: 0.4608289999999999999999999999998
mean: 0.0021168718260629017460122123912
EIDENT_P pequiv_diff:
max: 6.349206
mean: 0.8329433236638427406941910635788
ENUSSINOV_P pequiv_diff:
max: 0.9216590000000000000000000000003
mean: 0.06389156198714680799411352191555
EPAM120_P pequiv_diff:
max: 1.333333333333333333333333333334
mean: 0.003316074006858324015341832553166
EBLOSUM62_P successful1:
num: 389
pequiv1 min: 0.9758064516129032258064516129032
id1 min: 0.5724465558194774346793349168646
id4 min: 0.5591647331786542923433874709977
EGONNET_P successful1:
num: 461
pequiv1 min: 0.9758064516129032258064516129032
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EIDENT_P successful1:
num: 57
pequiv1 min: 0.947619047619047619047619047619
id1 min: 0.6589861751152073732718894009217
id4 min: 0.6507936507936507936507936507937
ENUSSINOV_P successful1:
num: 333
pequiv1 min: 0.9790697674418604651162790697674
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EPAM120_P successful1:
num: 460
pequiv1 min: 0.9758064516129032258064516129032
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EBLOSUM62_P failure1:
num: 165
pequiv1 max: 1
id1 max: 0.9940828402366863905325443786982
id4 max: 0.9940828402366863905325443786982
EGONNET_P failure1:
num: 93
pequiv1 max: 1
id1 max: 0.9944134078212290502793296089385
id4 max: 0.9944134078212290502793296089385
EIDENT_P failure1:
num: 497
pequiv1 max: 1
id1 max: 0.9944134078212290502793296089385
id4 max: 0.9944134078212290502793296089385
ENUSSINOV_P failure1:
num: 221
pequiv1 max: 1
id1 max: 1
id4 max: 1
EPAM120_P failure1:
num: 94
pequiv1 max: 1
id1 max: 0.9944134078212290502793296089385
id4 max: 0.9944134078212290502793296089385
EBLOSUM62_P successful2:
num: 331
pequiv1 min: 0.9793103448275862068965517241379
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EGONNET_P successful2:
num: 408
pequiv1 min: 0.9793103448275862068965517241379
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EIDENT_P successful2:
num: 26
pequiv1 min: 0.986013986013986013986013986014
id1 min: 0.6589861751152073732718894009217
id4 min: 0.6589861751152073732718894009217
ENUSSINOV_P successful2:
num: 309
pequiv1 min: 0.9934210526315789473684210526316
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EPAM120_P successful2:
num: 403
pequiv1 min: 0.9793103448275862068965517241379
id1 min: 0.6028368794326241134751773049645
id4 min: 0.6028368794326241134751773049645
EBLOSUM62_P failure2:
num: 49
pequiv1 max: 1
id1 max: 0.9929078014184397163120567375887
id4 max: 0.9929078014184397163120567375887
pequiv1 max-below 0.9793103448275862068965517241379: 0.9777777777777777777777777777778
id1 none-below 0.6028368794326241134751773049645
id4 none-below 0.6028368794326241134751773049645
EGONNET_P failure2:
num: 53
pequiv1 max: 1
id1 max: 0.9944134078212290502793296089385
id4 max: 0.9944134078212290502793296089385
pequiv1 max-below 0.9793103448275862068965517241379: 0.9777777777777777777777777777778
id1 max-below 0.6028368794326241134751773049645: 0.5748218527315914489311163895487
id4 max-below 0.6028368794326241134751773049645: 0.5614849187935034802784222737819
EIDENT_P failure2:
num: 474
pequiv1 max: 1
id1 max: 0.9944134078212290502793296089385
id4 max: 0.9944134078212290502793296089385
pequiv1 max-below 0.986013986013986013986013986014: 0.9857142857142857142857142857143
id1 max-below 0.6589861751152073732718894009217: 0.6588628762541806020066889632107
id4 max-below 0.6589861751152073732718894009217: 0.6578947368421052631578947368421
ENUSSINOV_P failure2:
num: 105
pequiv1 max: 1
id1 max: 1
id4 max: 1
pequiv1 max-below 0.9934210526315789473684210526316: 0.9933774834437086092715231788079
id1 max-below 0.6028368794326241134751773049645: 0.5724465558194774346793349168646
id4 max-below 0.6028368794326241134751773049645: 0.5591647331786542923433874709977
EPAM120_P failure2:
num: 67
pequiv1 max: 1
id1 max: 0.9944134078212290502793296089385
id4 max: 0.9944134078212290502793296089385
pequiv1 max-below 0.9793103448275862068965517241379: 0.9777777777777777777777777777778
id1 max-below 0.6028368794326241134751773049645: 0.5724465558194774346793349168646
id4 max-below 0.6028368794326241134751773049645: 0.5591647331786542923433874709977
Finished!