analyze.align.clustered.pdbs.11.pl analyze.align.clustered.pdbs.11.txt Have 1917 chains in clusters Checking align.clustered.pdbs.output1.bz2 No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 183, chunk 45. No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 183, chunk 46. Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 71. Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 72. Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 205. Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 206. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 213. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 229. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 230. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 231. Finished reading align.clustered.pdbs.output1.bz2 Checking align.clustered.pdbs.output2 No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 183, chunk 45. No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 183, chunk 46. Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 71. Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 72. Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 205. Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 206. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 213. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 229. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 230. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 231. Finished reading align.clustered.pdbs.output2 Checking align.clustered.pdbs.output3 Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 208. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 224. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 225. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 226. Finished reading align.clustered.pdbs.output3 Checking align.clustered.pdbs.output4 Problem with 1CBJA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 42. Problem with 1IIHA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 115. Problem with 1N55A 5TIMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 137. Problem with 1OA4A 2NLRA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 146. Problem with 1Q0EA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 151. Problem with 1TCDA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 179. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 196. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 204. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 205. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 206. Finished reading align.clustered.pdbs.output4 Checking align.clustered.pdbs.output5 Problem with 1CBJA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 36. Problem with 1IIHA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 109. Problem with 1N55A 5TIMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 131. Problem with 1OA4A 2NLRA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 140. Problem with 1Q0EA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 146. Problem with 1TCDA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 174. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 191. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 199. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 200. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 201. Finished reading align.clustered.pdbs.output5 Checking align.clustered.pdbs.output6 Problem with 1CBJA 1MFMA: quality 20.774364 vs 20.808477; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 36. Problem with 1Q0EA 1MFMA: quality 20.46743 vs 20.521113; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 146. Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 191. Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 199. Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 200. Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 201. Finished reading align.clustered.pdbs.output6 Checking align.clustered.pdbs.output7 Finished reading align.clustered.pdbs.output7 Checking align.clustered.pdbs.output8 Problem with 1J8FC 1J8FA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 120. Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 226, chunk 122. Problem with 1NH2B 1NH2C; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 147. Problem with 1NVPB 1NVPC; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 155. Finished reading align.clustered.pdbs.output8 Checking align.clustered.pdbs.2.output1 Finished reading align.clustered.pdbs.2.output1 Checking align.clustered.pdbs.2.output2 Finished reading align.clustered.pdbs.2.output2 Checking align.clustered.pdbs.2.output3 Finished reading align.clustered.pdbs.2.output3 Checking align.clustered.pdbs.2.output4 Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 249. Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 250. Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 255. Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 258. Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 265. Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 272. Problem with 1P1VB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 274. Problem with 1FUNA 1Q0EA: quality 35.813333 vs 36.164376; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 287. Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 294. Problem with 1OZTM 1Q0EA: quality 30.648691 vs 30.9983; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 303. Problem with 1P1VB 1Q0EA: quality 28.540932 vs 28.69968; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 307. Problem with 1PTZA 1Q0EA: quality 36.771493 vs 36.787511; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 308. Problem with 1E9PA 1MFMA: quality 20.809678 vs 20.850012; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 315. Problem with 1E9QA 1MFMA: quality 20.78294 vs 20.830485; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 317. Finished reading align.clustered.pdbs.2.output4 Checking align.clustered.pdbs.2.output5 Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 249. Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 250. Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 255. Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 258. Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 265. Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 272. Problem with 1P1VB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 274. Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 289. Finished reading align.clustered.pdbs.2.output5 Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1 Problem with 1C72A 3GTUB: quality 22.70849 vs 22.796432; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 32. Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1 EBLOSUM62_P: 0 EGONNET_P: 0 EIDENT_P: 0 ENUSSINOV_P: 0 EPAM120_P: 0 Finished!