analyze.align.clustered.pdbs.11.pl analyze.align.clustered.pdbs.11.txt
Have 1917 chains in clusters
Checking align.clustered.pdbs.output1.bz2
No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 183, chunk 45.
No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 183, chunk 46.
Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 71.
Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 72.
Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 205.
Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 206.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 213.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 229.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 230.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 231.
Finished reading align.clustered.pdbs.output1.bz2
Checking align.clustered.pdbs.output2
No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 183, chunk 45.
No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 183, chunk 46.
Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 71.
Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 72.
Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 205.
Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 175, chunk 206.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 213.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 229.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 230.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 231.
Finished reading align.clustered.pdbs.output2
Checking align.clustered.pdbs.output3
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 208.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 224.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 225.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 226.
Finished reading align.clustered.pdbs.output3
Checking align.clustered.pdbs.output4
Problem with 1CBJA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 42.
Problem with 1IIHA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 115.
Problem with 1N55A 5TIMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 137.
Problem with 1OA4A 2NLRA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 146.
Problem with 1Q0EA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 151.
Problem with 1TCDA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 179.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 196.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 204.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 205.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 206.
Finished reading align.clustered.pdbs.output4
Checking align.clustered.pdbs.output5
Problem with 1CBJA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 36.
Problem with 1IIHA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 109.
Problem with 1N55A 5TIMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 131.
Problem with 1OA4A 2NLRA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 140.
Problem with 1Q0EA 1MFMA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 146.
Problem with 1TCDA 1N55A; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 174.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 191.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 199.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 200.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 201.
Finished reading align.clustered.pdbs.output5
Checking align.clustered.pdbs.output6
Problem with 1CBJA 1MFMA: quality 20.774364 vs 20.808477; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 36.
Problem with 1Q0EA 1MFMA: quality 20.46743 vs 20.521113; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 146.
Problem with 1XSOA 1CBJA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 191.
Problem with 2GSRA 13GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 199.
Problem with 2GSRA 17GSA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 200.
Problem with 2GSRA 3PGTA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 201.
Finished reading align.clustered.pdbs.output6
Checking align.clustered.pdbs.output7
Finished reading align.clustered.pdbs.output7
Checking align.clustered.pdbs.output8
Problem with 1J8FC 1J8FA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 120.
Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 226, chunk 122.
Problem with 1NH2B 1NH2C; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 147.
Problem with 1NVPB 1NVPC; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 155.
Finished reading align.clustered.pdbs.output8
Checking align.clustered.pdbs.2.output1
Finished reading align.clustered.pdbs.2.output1
Checking align.clustered.pdbs.2.output2
Finished reading align.clustered.pdbs.2.output2
Checking align.clustered.pdbs.2.output3
Finished reading align.clustered.pdbs.2.output3
Checking align.clustered.pdbs.2.output4
Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 249.
Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 250.
Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 255.
Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 258.
Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 265.
Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 272.
Problem with 1P1VB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 274.
Problem with 1FUNA 1Q0EA: quality 35.813333 vs 36.164376; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 287.
Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 294.
Problem with 1OZTM 1Q0EA: quality 30.648691 vs 30.9983; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 303.
Problem with 1P1VB 1Q0EA: quality 28.540932 vs 28.69968; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 307.
Problem with 1PTZA 1Q0EA: quality 36.771493 vs 36.787511; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 308.
Problem with 1E9PA 1MFMA: quality 20.809678 vs 20.850012; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 315.
Problem with 1E9QA 1MFMA: quality 20.78294 vs 20.830485; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 317.
Finished reading align.clustered.pdbs.2.output4
Checking align.clustered.pdbs.2.output5
Problem with 1CB4A 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 249.
Problem with 1E9PA 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 250.
Problem with 1HL4C 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 255.
Problem with 1HL5E 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 258.
Problem with 1OZTH 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 265.
Problem with 1OZUB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 272.
Problem with 1P1VB 1XSOA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 274.
Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 191, chunk 289.
Finished reading align.clustered.pdbs.2.output5
Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1
Problem with 1C72A 3GTUB: quality 22.70849 vs 22.796432; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 239, chunk 32.
Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1
EBLOSUM62_P: 0
EGONNET_P: 0
EIDENT_P: 0
ENUSSINOV_P: 0
EPAM120_P: 0
Finished!