analyze.align.clustered.pdbs.11.pl analyze.align.clustered.pdbs.11.txt Have 1979 chains in clusters Checking align.clustered.pdbs.output1.bz2 No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 214, chunk 45. No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 214, chunk 46. Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 71. Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 72. Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 205. Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 206. Finished reading align.clustered.pdbs.output1.bz2 Checking align.clustered.pdbs.output2 No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 214, chunk 45. No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 214, chunk 46. Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 71. Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 72. Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 205. Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 206. Finished reading align.clustered.pdbs.output2 Checking align.clustered.pdbs.output3 Finished reading align.clustered.pdbs.output3 Checking align.clustered.pdbs.output4 Finished reading align.clustered.pdbs.output4 Checking align.clustered.pdbs.output5 Finished reading align.clustered.pdbs.output5 Checking align.clustered.pdbs.output6 Finished reading align.clustered.pdbs.output6 Checking align.clustered.pdbs.output7 Finished reading align.clustered.pdbs.output7 Checking align.clustered.pdbs.output8 Problem with 1J8FC 1J8FA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 220, chunk 120. Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 122. Problem with 1NH2B 1NH2C: RMSD 6.888221; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 147. Problem with 1NVPB 1NVPC: RMSD 5.691342; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 155. Finished reading align.clustered.pdbs.output8 Checking align.clustered.pdbs.2.output1 Finished reading align.clustered.pdbs.2.output1 Checking align.clustered.pdbs.2.output2 Finished reading align.clustered.pdbs.2.output2 Checking align.clustered.pdbs.2.output3 Finished reading align.clustered.pdbs.2.output3 Checking align.clustered.pdbs.2.output4 Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 220, chunk 294. Finished reading align.clustered.pdbs.2.output4 Checking align.clustered.pdbs.2.output5 Finished reading align.clustered.pdbs.2.output5 Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1 Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1 Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2 Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2 Checking align.clustered.pdbs.2.output6 Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 758. Problem with 1L8BB 1IPBA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 220, chunk 804. Problem with 1RF8A 1AP80: RMSD 6.05267; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 876. Finished reading align.clustered.pdbs.2.output6 Checking align.clustered.pdbs.2.output7 Problem with 1HL5M 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 220, chunk 291. Finished reading align.clustered.pdbs.2.output7 Checking align.clustered.pdbs.2.output8 Problem with 1SZDA 1Q17C: RMSD 4.921818; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 1046. Problem with 1KNLA 1V0MA: RMSD 8.331653; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 1054. Problem with 1KNMA 1V0MA: RMSD 8.304771; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 1055. Finished reading align.clustered.pdbs.2.output8 Checking align.clustered.pdbs.2.output9 Problem with 1MC9A 1V0MA: RMSD 8.860473; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 1052. Finished reading align.clustered.pdbs.2.output9 Checking align.clustered.pdbs.3.output1 Finished reading align.clustered.pdbs.3.output1 Have 24 clusters with successful flags, 25 clusters with unsuccessful flags EBLOSUM62_P: 5 EGONNET_P: 4.666666666666666666666666666667 EIDENT_P: 3.833333333333333333333333333333 ENUSSINOV_P: 4 EPAM120_P: 6.5 Finished!