analyze.align.clustered.pdbs.11.pl analyze.align.clustered.pdbs.11.txt
Have 1979 chains in clusters
Checking align.clustered.pdbs.output1.bz2
No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 214, chunk 45.
No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 214, chunk 46.
Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 71.
Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 72.
Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 205.
Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 206.
Finished reading align.clustered.pdbs.output1.bz2
Checking align.clustered.pdbs.output2
No cluster for either of 1D2KA 1W9PA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 214, chunk 45.
No cluster for either of 1D2KA 1W9UA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 214, chunk 46.
Different clusters for 1FH9A (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 71.
Different clusters for 1FHDA (1FH9A) 1V6WA (1V0MA); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 72.
Different clusters for 1V0MA (1V0MA) 1FH9A (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 205.
Different clusters for 1V0MA (1V0MA) 1FHDA (1FH9A); skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 206, chunk 206.
Finished reading align.clustered.pdbs.output2
Checking align.clustered.pdbs.output3
Finished reading align.clustered.pdbs.output3
Checking align.clustered.pdbs.output4
Finished reading align.clustered.pdbs.output4
Checking align.clustered.pdbs.output5
Finished reading align.clustered.pdbs.output5
Checking align.clustered.pdbs.output6
Finished reading align.clustered.pdbs.output6
Checking align.clustered.pdbs.output7
Finished reading align.clustered.pdbs.output7
Checking align.clustered.pdbs.output8
Problem with 1J8FC 1J8FA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 220, chunk 120.
Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 122.
Problem with 1NH2B 1NH2C: RMSD 6.888221; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 147.
Problem with 1NVPB 1NVPC: RMSD 5.691342; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 155.
Finished reading align.clustered.pdbs.output8
Checking align.clustered.pdbs.2.output1
Finished reading align.clustered.pdbs.2.output1
Checking align.clustered.pdbs.2.output2
Finished reading align.clustered.pdbs.2.output2
Checking align.clustered.pdbs.2.output3
Finished reading align.clustered.pdbs.2.output3
Checking align.clustered.pdbs.2.output4
Problem with 1N18A 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 220, chunk 294.
Finished reading align.clustered.pdbs.2.output4
Checking align.clustered.pdbs.2.output5
Finished reading align.clustered.pdbs.2.output5
Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1
Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output1
Checking /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2
Finished reading /server/people/staff/easmith/bin/research/classification2/align.pfam.clustered.pdbs.output2
Checking align.clustered.pdbs.2.output6
Problem with 1KL9A 1Q8KA: RMSD 2.31262; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 758.
Problem with 1L8BB 1IPBA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 220, chunk 804.
Problem with 1RF8A 1AP80: RMSD 6.05267; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 876.
Finished reading align.clustered.pdbs.2.output6
Checking align.clustered.pdbs.2.output7
Problem with 1HL5M 1Q0EA; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 220, chunk 291.
Finished reading align.clustered.pdbs.2.output7
Checking align.clustered.pdbs.2.output8
Problem with 1SZDA 1Q17C: RMSD 4.921818; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 1046.
Problem with 1KNLA 1V0MA: RMSD 8.331653; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 1054.
Problem with 1KNMA 1V0MA: RMSD 8.304771; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 1055.
Finished reading align.clustered.pdbs.2.output8
Checking align.clustered.pdbs.2.output9
Problem with 1MC9A 1V0MA: RMSD 8.860473; skipping at /server/people/staff/easmith/perl/prog/analyze.align.clustered.pdbs.11.pl line 256, chunk 1052.
Finished reading align.clustered.pdbs.2.output9
Checking align.clustered.pdbs.3.output1
Finished reading align.clustered.pdbs.3.output1
Have 24 clusters with successful flags, 25 clusters with unsuccessful flags
EBLOSUM62_P: 5
EGONNET_P: 4.666666666666666666666666666667
EIDENT_P: 3.833333333333333333333333333333
ENUSSINOV_P: 4
EPAM120_P: 6.5
Finished!