# fungi_metazoa.1111_GTF.S.na.full.new.reduce3.ent MODEL: 1111_GTF f fungi_metazoa.1111_GTF.S.na.full.new.reduce3.ent MAIN_BAD: 13 19 24 25 85 98 102 140 164 SIDE_BAD: 19 24 31 32 35 50 85 102 104 134 137 177 139 140 163 164 181 IS_OLD: Y MODEL: 1111_GTF f2 fungi_metazoa.1111_GTF.S.na.full2.new.reduce3.ent MAIN_BAD: 13 19 24 25 85 98 102 164 SIDE_BAD: 19 24 31 32 50 102 134 137 177 139 140 163 164 181 IS_OLD: Y MODEL: 1111_STF f fungi_metazoa.1111_STF.S.na.full.new.reduce3.ent MAIN_BAD: 13 23 25 85 98 105 129 131 140 164 184 SIDE_BAD: 24 28 35 41 111 50 67 73 121 100 105 108 126 134 129 137 139 177 140 159 IS_OLD: Y # fungi_metazoa.1111_STF.S.na.full2.new.reduce3.ent MODEL: 1111_STF f2 fungi_metazoa.1111_STF.S.na.full2.new.reduce3.ent MAIN_BAD: 13 25 85 102 105 129 131 161 164 179 SIDE_BAD: 23 24 28 35 41 50 67 100 102 105 108 129 126 134 137 139 177 140 159 161 184 IS_OLD: Y # fungi_metazoa.1111_GTF.S.na.full.partial.new.reduce3.ent MODEL: 1111_GTF fp fungi_metazoa.1111_GTF.S.na.full.partial.new.reduce3.ent MAIN_BAD: 13 19 23 24 25 85 102 131 140 164 SIDE_BAD: 2 10 19 24 31 32 50 102 134 181 163 164 IS_OLD: Y # fungi_metazoa.1111_GTF.S.na.full2.partial.new.reduce3.ent MODEL: 1111_GTF f2p fungi_metazoa.1111_GTF.S.na.full2.partial.new.reduce3.ent MAIN_BAD: 13 19 23 24 25 131 140 164 SIDE_BAD: 2 10 19 24 31 32 35 36 116 50 85 108 134 163 164 181 IS_OLD: Y # fungi_metazoa.1111_STF.S.na.full.partial.new.reduce3.ent MODEL: 1111_STF fp fungi_metazoa.1111_STF.S.na.full.partial.new.reduce3.ent MAIN_BAD: 13 24 25 85 98 129 131 164 SIDE_BAD: 24 28 35 41 111 46 50 73 88 104 108 129 134 157 182 159 164 IS_OLD: Y # fungi_metazoa.1111_STF.S.na.full2.partial.new.reduce3.ent MODEL: 1111_STF f2p fungi_metazoa.1111_STF.S.na.full2.partial.new.reduce3.ent MAIN_BAD: 13 23 25 85 98 102 129 131 140 164 SIDE_BAD: 2 24 25 28 41 111 50 67 73 121 102 108 126 134 129 140 159 177 IS_OLD: Y # 174 is proline in 0011_[KQ]P - not using, don't think is valid seq # (at least not with those gaps, other residues, etcetera) #MODEL: 0011_KP f ascomycota.0011_KP.full.new.reduce3.ent #MAIN_BAD: 174 #SIDE_BAD: 174 #MODEL: 0011_KP f2 ascomycota.0011_KP.full2.new.reduce3.ent #MAIN_BAD: 174 #SIDE_BAD: 174 #MODEL: 0011_QP f ascomycota.0011_QP.na.full.new.reduce3.ent #MAIN_BAD: 174 #SIDE_BAD: 174 #MODEL: 0011_QP f2 ascomycota.0011_QP.na.full2.new.reduce3.ent #MAIN_BAD: 174 #SIDE_BAD: 174 MODEL: 0011_KD f ascomycota.0011_KD.na.full.new.reduce3.ent MAIN_BAD: 6 15 16 18 23 29 30 47 53 54 110 111 112 115 116 137 174 176 177 178 185 SIDE_BAD: 10 40 23 33 145 37 45 57 97 108 112 116 136 137 140 143 145 168 174 183 190 205 MODEL: 0011_KD f2 ascomycota.0011_KD.na.full2.new.reduce3.ent MAIN_BAD: 6 16 18 23 29 30 47 53 54 110 111 112 115 116 137 174 176 178 185 SIDE_BAD: 10 40 23 37 45 57 88 97 108 112 116 119 120 136 138 137 140 143 145 168 174 183 190 205 MODEL: 0011_QD f ascomycota.0011_QD.na.full.new.reduce3.ent MAIN_BAD: 6 16 29 30 45 47 53 54 91 110 111 112 115 116 176 177 178 184 188 SIDE_BAD: 8 120 10 40 34 36 37 55 122 56 107 57 90 91 97 112 118 138 136 145 174 176 177 180 183 184 188 190 198 206 MODEL: 0011_QD f2 ascomycota.0011_QD.na.full2.new.reduce3.ent MAIN_BAD: 6 16 18 29 30 47 53 54 91 110 111 112 115 116 119 137 176 177 184 185 SIDE_BAD: 8 120 10 40 34 37 55 122 56 107 90 91 97 112 136 138 137 140 143 145 172 174 177 180 181 184 190 MODEL: 0011_KD fp ascomycota.0011_KD.na.fp.new.reduce3.ent MAIN_BAD: 6 16 18 23 29 30 53 54 110 111 112 115 116 137 174 176 177 178 185 205 SIDE_BAD: 23 33 145 45 57 88 97 108 112 116 120 136 138 137 140 143 145 168 174 183 190 205 MODEL: 0011_QD fp ascomycota.0011_QD.na.fp.new.reduce3.ent MAIN_BAD: 6 16 18 29 30 47 53 91 110 111 112 115 116 119 137 174 176 177 184 185 SIDE_BAD: 10 40 34 37 38 56 107 57 77 90 91 97 108 112 120 134 142 137 184 140 143 145 172 174 190 ALIGN_TO: Y